Package: mapmixture 1.1.4
mapmixture: Spatial Visualisation of Admixture on a Projected Map
Visualise admixture as pie charts on a projected map, admixture as traditional structure barplots or facet barplots, and scatter plots from genotype principal components analysis. A 'shiny' app allows users to create admixture maps interactively. Jenkins TL (2024) <doi:10.1111/1755-0998.13943>.
Authors:
mapmixture_1.1.4.tar.gz
mapmixture_1.1.4.zip(r-4.5)mapmixture_1.1.4.zip(r-4.4)mapmixture_1.1.4.zip(r-4.3)
mapmixture_1.1.4.tgz(r-4.4-any)mapmixture_1.1.4.tgz(r-4.3-any)
mapmixture_1.1.4.tar.gz(r-4.5-noble)mapmixture_1.1.4.tar.gz(r-4.4-noble)
mapmixture_1.1.4.tgz(r-4.4-emscripten)mapmixture_1.1.4.tgz(r-4.3-emscripten)
mapmixture.pdf |mapmixture.html✨
mapmixture/json (API)
NEWS
# Install 'mapmixture' in R: |
install.packages('mapmixture', repos = c('https://tom-jenkins.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tom-jenkins/mapmixture/issues
admixtureancestrymapmixturepopulation-structureshiny
Last updated 1 months agofrom:4265480cf2. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 25 2024 |
R-4.5-win | OK | Oct 25 2024 |
R-4.5-linux | OK | Oct 25 2024 |
R-4.4-win | OK | Oct 26 2024 |
R-4.4-mac | OK | Oct 25 2024 |
R-4.3-win | OK | Oct 25 2024 |
R-4.3-mac | OK | Oct 25 2024 |
Exports:add_pie_chartsbuild_pie_chartcalc_default_bboxlaunch_mapmixturemapmixturemerge_coords_dataread_input_datascatter_plotstandardise_datastructure_plottransform_admix_datatransform_bboxtransform_df_coords
Dependencies:abindbase64encbslibcachemclassclassIntclicolorspacecolourpickercommonmarkcpp11crayoncurlDBIdigestdplyre1071evaluatefansifarverfastmapfontawesomefsgenericsggplot2ggspatialgluegtablehighrhmshtmltoolshtmlwidgetshttpuvisobandjpegjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimeminiUImunsellnlmepillarpkgconfigpngprettyunitsprogresspromisesproxypurrrR6rappdirsRColorBrewerRcpprlangrmarkdownrnaturalearthdatarosms2sassscalessfshinyshinyFeedbackshinyjsshinyWidgetssourcetoolsstringistringrtibbletidyrtidyselecttinytexunitsutf8vctrsviridisLitewaiterwithrwkxfunxtableyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Launch Shiny App | launch_mapmixture |
Plot Pie Charts on Map | mapmixture |
PCA or DAPC Scatter Plot | scatter_plot |
STRUCTURE Barplot | structure_plot |