Package: mapmixture 1.1.4

mapmixture: Spatial Visualisation of Admixture on a Projected Map

Visualise admixture as pie charts on a projected map, admixture as traditional structure barplots or facet barplots, and scatter plots from genotype principal components analysis. A 'shiny' app allows users to create admixture maps interactively. Jenkins TL (2024) <doi:10.1111/1755-0998.13943>.

Authors:Tom Jenkins [aut, cre, cph]

mapmixture_1.1.4.tar.gz
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mapmixture.pdf |mapmixture.html
mapmixture/json (API)
NEWS

# Install 'mapmixture' in R:
install.packages('mapmixture', repos = c('https://tom-jenkins.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/tom-jenkins/mapmixture/issues

On CRAN:

admixtureancestrymapmixturepopulation-structureshiny

5.55 score 39 stars 8 scripts 317 downloads 13 exports 93 dependencies

Last updated 2 months agofrom:4265480cf2. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winOKOct 25 2024
R-4.5-linuxOKOct 25 2024
R-4.4-winOKOct 26 2024
R-4.4-macOKOct 25 2024
R-4.3-winOKOct 25 2024
R-4.3-macOKOct 25 2024

Exports:add_pie_chartsbuild_pie_chartcalc_default_bboxlaunch_mapmixturemapmixturemerge_coords_dataread_input_datascatter_plotstandardise_datastructure_plottransform_admix_datatransform_bboxtransform_df_coords

Dependencies:abindbase64encbslibcachemclassclassIntclicolorspacecolourpickercommonmarkcpp11crayoncurlDBIdigestdplyre1071evaluatefansifarverfastmapfontawesomefsgenericsggplot2ggspatialgluegtablehighrhmshtmltoolshtmlwidgetshttpuvisobandjpegjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimeminiUImunsellnlmepillarpkgconfigpngprettyunitsprogresspromisesproxypurrrR6rappdirsRColorBrewerRcpprlangrmarkdownrnaturalearthdatarosms2sassscalessfshinyshinyFeedbackshinyjsshinyWidgetssourcetoolsstringistringrtibbletidyrtidyselecttinytexunitsutf8vctrsviridisLitewaiterwithrwkxfunxtableyaml